STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX70914.1Hypothetical protein. (626 aa)    
Predicted Functional Partners:
mnmE
tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.842
SDX70890.1
Lipopolysaccharide transport system permease protein.
 
  
 0.769
SDX70835.1
Glycosyltransferase, GT2 family.
 
  
 0.766
SDY29629.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.692
SDY35100.1
Polysaccharide biosynthesis protein.
  
 
 0.692
SDY47314.1
Sulfotransferase family protein.
 
 
 0.690
SDX70864.1
Lipopolysaccharide transport system ATP-binding protein.
 
  
 0.687
SDX66204.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.656
SDY28427.1
dTDP-4-dehydrorhamnose reductase.
 
  
 0.619
SDX72595.1
Protein of unknown function.
 
     0.606
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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