STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX80247.1Protein of unknown function DUF29. (149 aa)    
Predicted Functional Partners:
SDX37998.1
Ankyrin repeat-containing protein.
    
 0.969
SDY12179.1
Hypothetical protein.
   
 0.935
SDX66204.1
Glycosyltransferase involved in cell wall bisynthesis.
   
 0.845
SDX80270.1
Zinc-ribbon containing domain-containing protein.
       0.773
SDY10907.1
PELOTA RNA binding domain-containing protein.
    
  0.756
SDX30038.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
  0.729
SDX54480.1
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase/2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase.
    
  0.729
SDX80410.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
    
  0.729
SDX80999.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
  0.729
bioH
Pimeloyl-[acyl-carrier protein] methyl ester esterase; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
    
  0.729
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.