STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY04603.1ParD-like antitoxin of type II toxin-antitoxin system. (77 aa)    
Predicted Functional Partners:
SDX36956.1
ParE-like toxin of type II toxin-antitoxin system.
 
     0.813
SDY05231.1
Hypothetical protein.
  
     0.586
SDY05252.1
Putative toxin-antitoxin system toxin component, PIN family.
  
     0.542
SDY04630.1
Hypothetical protein.
       0.499
SDY04660.1
Hypothetical protein.
       0.499
SDX59171.1
Hypothetical protein.
  
     0.462
SDY40895.1
Hypothetical protein.
  
     0.457
SDY33958.1
Predicted transcriptional regulator.
  
     0.402
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.