STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY08107.1Protein of unknown function. (143 aa)    
Predicted Functional Partners:
nth
Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.829
SDY38643.1
Uncharacterized conserved protein, contains Mth938-like domain.
  
     0.718
SDY08626.1
Hypothetical protein.
  
     0.716
SDY38329.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.691
SDX62127.1
NADH-quinone oxidoreductase subunit M.
  
     0.688
SDX71471.1
SAM-dependent methyltransferase, MidA family.
  
     0.667
SDX41037.1
Hypothetical protein; Belongs to the UPF0250 family.
  
     0.566
SDX77788.1
FAD/FMN-containing dehydrogenase.
  
     0.554
SDY08163.1
Transglycosylase SLT domain-containing protein.
       0.539
SDX45923.1
Outer membrane protein assembly factor BamC.
 
     0.526
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.