STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY31451.1Hypothetical protein. (423 aa)    
Predicted Functional Partners:
SDY31483.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.947
SDY31394.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
 
    
0.815
SDY31423.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
 
    
0.792
SDY34821.1
Glycosyltransferase, GT2 family.
 
     0.775
SDY31360.1
dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD+).
 
   
 0.768
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.762
SDY44254.1
Initiator Replication protein.
  
     0.760
SDX59846.1
Initiator Replication protein.
  
     0.716
SDY13438.1
Ribonucleoside-triphosphate reductase.
    
  0.669
SDX90886.1
Heme oxygenase.
  
  
  0.668
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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