STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY50262.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
SDY50289.1
Integrase core domain-containing protein.
       0.784
SDX57404.1
Predicted nuclease of the RNAse H fold, HicB family.
  
     0.601
SDY04660.1
Hypothetical protein.
  
     0.576
SDX61970.1
Predicted nuclease of the RNAse H fold, HicB family.
  
     0.533
SDY38488.1
N-6 DNA Methylase.
  
     0.518
SDY39028.1
Hypothetical protein.
  
     0.480
SDY32982.1
TaqI-like C-terminal specificity domain-containing protein.
  
     0.439
SDX50186.1
Hypothetical protein.
  
     0.437
SDY00504.1
Putative toxin-antitoxin system toxin component, PIN family.
  
     0.433
SDY06313.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.