Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COL18A1 | GPC1 | ENSRROP00000035652 | ENSRROP00000011076 | Collagen type XVIII alpha 1 chain. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.627 |
COL18A1 | SDC1 | ENSRROP00000035652 | ENSRROP00000018983 | Collagen type XVIII alpha 1 chain. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.430 |
FGF2 | GPC1 | ENSRROP00000037507 | ENSRROP00000011076 | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.956 |
FGF2 | HBEGF | ENSRROP00000037507 | ENSRROP00000011520 | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | Heparin binding EGF like growth factor. | 0.471 |
FGF2 | SDC1 | ENSRROP00000037507 | ENSRROP00000018983 | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.856 |
FGF2 | SDC4 | ENSRROP00000037507 | ENSRROP00000042411 | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.820 |
GPC1 | COL18A1 | ENSRROP00000011076 | ENSRROP00000035652 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Collagen type XVIII alpha 1 chain. | 0.627 |
GPC1 | FGF2 | ENSRROP00000011076 | ENSRROP00000037507 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | 0.956 |
GPC1 | HBEGF | ENSRROP00000011076 | ENSRROP00000011520 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Heparin binding EGF like growth factor. | 0.925 |
GPC1 | HS2ST1 | ENSRROP00000011076 | ENSRROP00000012375 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Heparan sulfate 2-O-sulfotransferase 1. | 0.566 |
GPC1 | NOTUM | ENSRROP00000011076 | ENSRROP00000023291 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Notum, palmitoleoyl-protein carboxylesterase. | 0.640 |
GPC1 | SDC1 | ENSRROP00000011076 | ENSRROP00000018983 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.974 |
GPC1 | SDC2 | ENSRROP00000011076 | ENSRROP00000017999 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.915 |
GPC1 | SDC4 | ENSRROP00000011076 | ENSRROP00000042411 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.948 |
GPC1 | SLIT2 | ENSRROP00000011076 | ENSRROP00000026019 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Slit guidance ligand 2. | 0.731 |
GPC1 | SLIT3 | ENSRROP00000011076 | ENSRROP00000010962 | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Slit guidance ligand 3. | 0.705 |
HBEGF | FGF2 | ENSRROP00000011520 | ENSRROP00000037507 | Heparin binding EGF like growth factor. | Fibroblast growth factor; Belongs to the heparin-binding growth factors family. | 0.471 |
HBEGF | GPC1 | ENSRROP00000011520 | ENSRROP00000011076 | Heparin binding EGF like growth factor. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.925 |
HS2ST1 | GPC1 | ENSRROP00000012375 | ENSRROP00000011076 | Heparan sulfate 2-O-sulfotransferase 1. | Glypican 1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.566 |
HS2ST1 | SDC1 | ENSRROP00000012375 | ENSRROP00000018983 | Heparan sulfate 2-O-sulfotransferase 1. | Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. | 0.684 |
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