STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nqrDNa+-transporting ubiquinone oxidoreductase subunit D; Belongs to the NqrDE/RnfAE family. (208 aa)    
Predicted Functional Partners:
nqrF
Na+-transporting ubiquinone oxidoreductase subunit F.
 
 
 0.989
nqrE
Na+-transporting ubiquinone oxidoreductase subunit E; Belongs to the NqrDE/RnfAE family.
 
 
0.987
nqrC
Na+-transporting ubiquinone oxidoreductase subunit C.
 
 
 0.981
nqrB
Na+-transporting ubiquinone oxidoreductase subunit B.
 
   
 0.955
rnfD
NADH oxidoreductase complex RnfABCDGE type, D subunit.
 
   
 0.836
abpE
Membrane-associated lipoprotein involved in thiamine biosynthesi; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.803
rnfB
Electron transport complex, RnfABCDGE type, B subunit.
 
   
 0.656
rnfC
NADH oxidoreductase complex RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 
   
 0.581
BN85302240
Hypothetical protein.
       0.486
tktA
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
       0.453
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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