Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN85304500Transcriptional regulator, LacI family. (336 aa)    
Predicted Functional Partners:
BN85304510
Conserved hypothetical protein.
 
     0.782
cbp
Cellobiose phosphorylase.
 
     0.700
BN85304520
ABC transporter, permease (probably sugar transport).
 
     0.633
BN85304530
ABC transporter, permease.
 
     0.570
BN85300520
Sensor hybrid histidine kinase.
    
 
 0.436
pykF-2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.432
ampS
Aminopeptidase T family.
       0.422
hPr1
Phosphocarrier protein (histidine phosphorylation site; PTS-related).
   
 
 0.408
hPr2
Phosphocarrier protein HPr (serine phosphorylation site), PTS-related.
   
 
 0.408
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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