STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN85304510Conserved hypothetical protein. (463 aa)    
Predicted Functional Partners:
BN85304520
ABC transporter, permease (probably sugar transport).
 
  0.984
BN85304530
ABC transporter, permease.
 
  0.975
BN85308480
Carbohydrate ABC transporter, ATPase component; Belongs to the ABC transporter superfamily.
  
  0.899
BN85313830
ABC transporter, ATPase component; Belongs to the ABC transporter superfamily.
  
  0.899
malK
ABC-type sugar transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
  0.899
cbp
Cellobiose phosphorylase.
 
     0.855
BN85304500
Transcriptional regulator, LacI family.
 
     0.782
BN85307890
Cellobiose phosphorylase.
 
     0.738
BN85314430
Hypothetical protein.
  
     0.595
BN85314440
Precited cellulosome enzyme.
  
     0.576
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.