Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN85306010Transcriptional regulator, Fur family; Belongs to the Fur family. (128 aa)    
Predicted Functional Partners:
znuC
ABC-type Mn2+/Zn2+ transport systems, ATP-binding subunit.
  
  
 0.863
znuB
ABC-type Mn2+/Zn2+ transport systems, permease component.
  
  
 0.824
znuA
ABC-type Mn2+/Zn2+ transport system, periplasmic component.
  
  
 0.820
BN85306070
Conserved hypothetical protein (DUF448).
 
    0.554
rimP
Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
  
    0.546
nusA
Transcription termination factor; Participates in both transcription termination and antitermination.
  
    0.535
BN85300520
Sensor hybrid histidine kinase.
   
 
 0.518
BN85306080
Ribosomal protein L7Ae/L30e/S12e/Gadd45.
       0.481
feoA
Putative Fe2+ transport system protein A.
     
 0.472
rpoA
DNA-directed RNA polymerase, subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.471
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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