Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN85308560Transcriptional regulator, IclR family. (241 aa)    
Predicted Functional Partners:
BN85308570
Xylose isomerase domain containing protein.
 
     0.816
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.802
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
     
 0.728
kdgK
Putative 2-dehydro-3-deoxygluconokinase.
     
 0.722
BN85308550
Putative 2-dehydro-3-deoxygluconokinase.
     
 0.722
BN85308540
Conserved hypothetical protein.
       0.713
kduD
2-deoxy-D-gluconate 3-dehydrogenase.
     
 0.663
BN85308510
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
 0.595
BN85314400
Conserved hypothetical protein.
  
     0.581
BN85303830
Ig-like domain surface-anchored protein with predicted N-acetylmuramoyl-L-alanine amidase activity.
  
     0.563
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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