Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BN85309530Diguanylate cyclase. (369 aa)    
Predicted Functional Partners:
BN85309500
Diguanylate cyclase/phosphodiesterase.
 
 
 0.900
BN85309510
Diguanylate cyclase/phosphodiesterase.
 
 
 0.884
BN85315070
Diguanylate phosphodiesterase.
 
 
 0.819
BN85313120
Metal dependent phosphohydrolase.
 
 
 0.812
BN85304480
EAL domain-containing protein; Conserved hypothetical protein, contains diguanylate cyclase and diguanylate phosphodiesterase domains.
 
    0.806
BN85300520
Sensor hybrid histidine kinase.
 
  
 0.750
BN85300510
Response regulator receiver modulated metal dependent phosphohydrolase.
  
    0.624
BN85309520
Glycosyl hydrolase, family 3 protein; Belongs to the glycosyl hydrolase 3 family.
       0.512
BN85315080
Diguanylate cyclase with PAS/PAC sensor.
 
 
 
0.482
BN85309540
GPR1/FUN34/yaaH family protein.
       0.466
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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