Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN8531103Hydrolase, NUDIX family. (163 aa)    
Predicted Functional Partners:
BN85311000
Conserved hypothetical protein (DUF990).
       0.439
BN85311010
Putative ABC transporter, permease component.
       0.439
BN85311020
Putative ABC-type transport system, ATPase component.
       0.439
ALmgs
1,2-diacylglycerol 3-glucosyltransferase.
  
    0.423
BN85311050
Conserved hypothetical protein.
  
    0.423
argS
Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.417
BN85311070
Hypothetical protein.
       0.406
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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