Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN85312450Zn-dependent carboxypeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (498 aa)    
Predicted Functional Partners:
trmA
tRNA (Uracil-5-)-methyltransferase, SAM dependent; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.776
sdaA
Serine dehydratase, single chain form.
       0.773
mgtE
Mg2+ transporter (MgtE).
       0.542
mgtE-2
Magnesium (Mg2+) transporter; Acts as a magnesium transporter.
       0.542
BN85312480
ABC-type transport system, permease and ATPase components.
 
     0.497
BN85312490
ABC-type multidrug transport system, ATPase and permease components.
 
     0.494
pepB
Peptidase M3B, oligoendopeptidase F.
 
    0.406
Your Current Organism:
Acholeplasma brassicae
NCBI taxonomy Id: 61635
Other names: A. brassicae, ATCC 49388, strain 0502
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