Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIQ98823.1Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
dppF
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 0.999
dppD
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
AIQ98824.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AIQ98825.1
Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
AIR01597.1
Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
AIR00214.1
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.989
oppD
Oligopeptide transporter ATP-binding component; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.989
AIR00216.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.974
AIR01575.1
Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.969
AIR02127.1
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.947
Your Current Organism:
Pluralibacter gergoviae
NCBI taxonomy Id: 61647
Other names: ATCC 33028, CCUG 14557, CDC 604-77, CIP 76.01, CIP 76.1, DSM 9245, Enterobacter gergoviae, Enterobacter gergoviensis, LMG 5739, LMG:5739, NBRC 105706, NCTC 11434, P. gergoviae
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