STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikENickel import ATP-binding protein NikE; With NikABCD is involved with nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)    
Predicted Functional Partners:
nikC
Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
AIR02651.1
Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
AIR02652.1
Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
nikD
Nickel import ATP-binding protein NikD; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.
 
 
0.994
nikR
Nickel responsive regulator; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel.
 
   
 0.838
AIQ98823.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.831
AIR00215.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.823
AIR02126.1
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.823
AIR01150.1
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.816
AIR00833.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
0.735
Your Current Organism:
Pluralibacter gergoviae
NCBI taxonomy Id: 61647
Other names: ATCC 33028, CCUG 14557, CDC 604-77, CIP 76.01, CIP 76.1, DSM 9245, Enterobacter gergoviae, Enterobacter gergoviensis, LMG 5739, LMG:5739, NBRC 105706, NCTC 11434, P. gergoviae
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