Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKL15359.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)    
Predicted Functional Partners:
AKL13268.1
DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
AKL13269.1
DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
AKL13270.1
DNA transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13272.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13273.1
Packaged DNA stabilization protein gp10; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13274.1
Packaged DNA stabilization protein gp4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13275.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AKL13276.1
Coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.413
AKL13277.1
Scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.413
Your Current Organism:
Kluyvera intermedia
NCBI taxonomy Id: 61648
Other names: ATCC 33110, CCUG 14183, CIP 79.27, CUETM 77-130, DSM 4581, Enterobacter intermedium, Enterobacter intermedius, Enterobacter intrermedium, K. intermedia, Kluyvera cochleae, LMG 2785, LMG:2785, NBRC 102594, NCTC 12125, strain Gavini E 86
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