STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL13552.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
AKL13551.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
AKL13548.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.674
AKL13549.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
AKL13550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.
       0.674
AKL13547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.624
AKL10747.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
AKL12321.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
AKL12732.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
AKL13256.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
AKL13553.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
Your Current Organism:
Kluyvera intermedia
NCBI taxonomy Id: 61648
Other names: ATCC 33110, CCUG 14183, CIP 79.27, CUETM 77-130, DSM 4581, Enterobacter intermedium, Enterobacter intermedius, Enterobacter intrermedium, K. intermedia, Kluyvera cochleae, LMG 2785, LMG:2785, NBRC 102594, NCTC 12125, strain Gavini E 86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.