STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML56454.1Transcriptional regulator, TetR family. (179 aa)    
Predicted Functional Partners:
AML56453.1
Transcriptional regulator.
 
   
 0.734
AML59320.1
Putative MFS Superfamily transporter precursor.
  
     0.703
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
   
 0.692
bvgS_3
Virulence sensor protein bvgS precursor.
  
 
 
 0.661
priC
Primosomal replication protein N prime prime.
  
     0.603
AML55811.1
Hypothetical protein.
  
     0.590
yebZ
Copper resistance protein D.
  
     0.584
hslJ
Heat shock protein hslJ.
  
     0.569
yqjC_2
Protein yqjC precursor.
  
     0.549
AML57392.1
Putative membrane protein YebY.
  
     0.547
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.