STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcBAerobic respiration control sensor protein arcB. (779 aa)    
Predicted Functional Partners:
arcA
Aerobic respiration control protein arcA.
 
0.993
bvgS_1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
 
 
0.975
barA_3
BarA sensory histidine kinase.
 
 
0.969
bvgS_3
Virulence sensor protein bvgS precursor.
 
 
0.968
ompR_1
Two-component system response regulator OmpR.
 
 
 0.952
luxQ
Sensor histidine kinase/response regulator.
 
 
0.949
rcsC
Two-component sensor protein RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
0.949
bdlA
Putative chemotactic transducer.
 
 
 0.949
cph2_1
Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
 0.943
csrD_2
RNase E specificity factor CsrD.
 
 
 0.942
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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