STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML56938.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
AML56939.1
Type III secretion cytoplasmic protein (YscL).
       0.584
AML56940.1
Hypothetical protein.
       0.574
AML56942.1
Hypothetical protein.
       0.573
invG
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG).
       0.565
prgK
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
       0.561
AML56936.1
Hypothetical protein.
       0.560
AML56935.1
Type III effector protein AvrE1.
       0.455
AML56943.1
Hypothetical protein.
       0.440
AML56934.1
Hypothetical protein.
       0.432
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.