STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiC_2N-acetylmuramoyl-L-alanine amidase. (417 aa)    
Predicted Functional Partners:
amiB
N-acetylmuramoyl-L-alanine amidase.
 
  
0.930
amiA
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.908
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
       0.580
glpG
GlpG protein (membrane protein of glp regulon); Rhomboid-type serine protease that catalyzes intramembrane proteolysis.
  
   0.572
rlpA
Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.519
elaB_1
ElaB protein.
  
     0.465
folE2
GTP cyclohydrolase I type 2.
  
  
 0.458
nlpD_2
Lipoprotein NlpD.
 
   
 0.444
envC_2
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP.
 
   
 0.428
elaB_2
Putative membrane protein YqjD.
  
     0.428
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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