STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA_1TonB-dependent receptor. (659 aa)    
Predicted Functional Partners:
ppsA_3
Polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.802
fhaB_4
Ferric siderophore transport system, periplasmic binding protein TonB.
  
 
 0.712
AML57736.1
Peptide synthetase.
  
  
 0.565
AML57741.1
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.526
entB
Isochorismatase.
 
  
 0.494
viuB_2
Iron-chelator utilization protein.
 
  
 0.445
fhuC_2
Ferric hydroxamate ABC transporter, ATP-binding protein FhuC.
 
  
 0.432
puuR_1-2
Putrescine utilization regulator.
       0.408
yusV_2
Ferric enterobactin transport ATP-binding protein FepC.
 
  
 0.401
fepA_3
TonB-dependent receptor.
 
  
0.400
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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