STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benCBenzoate dioxygenase, ferredoxin reductase component. (353 aa)    
Predicted Functional Partners:
AML57920.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
 0.999
cbdB_1
Benzoate 1,2-dioxygenase beta subunit.
 
 
 0.997
cbdA
Benzoate 1,2-dioxygenase alpha subunit.
 
 
 0.996
catA
Catechol 1,2-dioxygenase.
 
  
 0.951
catC
Muconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
 
  
 0.935
nuoC_2
NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D; Belongs to the complex I 49 kDa subunit family.
  
 
 0.901
catB_2
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.885
bioI
Putative cytochrome P450 hydroxylase.
 
 0.805
AML60110.1
Glutamate synthase small chain.
   
 0.747
AML57734.1
Malonyl CoA-acyl carrier protein transacylase.
   
 
 0.745
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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