STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_24Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (322 aa)    
Predicted Functional Partners:
gcvA_8
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.717
AML59074.1
TrpBA operon transcriptional activator.
  
     0.658
allS_2-2
Chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
  
     0.648
benM_3
LysR family transcriptional regulator YnfL; Belongs to the LysR transcriptional regulatory family.
  
     0.615
abgR_2
Cys regulon transcriptional activator CysB; Belongs to the LysR transcriptional regulatory family.
  
     0.594
benM_2
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.582
oxyR_1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.579
AML59743.1
LysR family transcriptional regulator YfeR.
  
     0.576
ppsC
Quinone oxidoreductase.
       0.541
abgR_1
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.512
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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