Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pcaK_24-hydroxybenzoate transporter. (459 aa)    
Predicted Functional Partners:
ligB_4
Protocatechuate 4,5-dioxygenase beta chain.
 
    0.838
AML58903.1
2-pyrone-4,6-dicarboxylic acid hydrolase.
 
     0.800
aroQ_2
3-dehydroquinate dehydratase II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.683
cbdB_1
Benzoate 1,2-dioxygenase beta subunit.
  
     0.519
catC
Muconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
  
     0.500
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.470
AML57920.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
  
     0.462
cbdA
Benzoate 1,2-dioxygenase alpha subunit.
  
    0.458
catA
Catechol 1,2-dioxygenase.
  
    0.446
yjjL_2
D-galactonate transporter.
  
     0.438
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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