STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligB_4Protocatechuate 4,5-dioxygenase beta chain. (420 aa)    
Predicted Functional Partners:
mii
FldA protein.
 
  
 0.961
AML58903.1
2-pyrone-4,6-dicarboxylic acid hydrolase.
 
   
 0.954
bsdC_1
3-polyprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
     
  0.900
pcaK_2
4-hydroxybenzoate transporter.
 
    0.837
proA_3
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
 
   
 0.812
AML58909.1
3-hydroxyisobutyrate dehydrogenase.
 
     0.798
AML59254.1
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase.
 
   
 0.776
aroQ_2
3-dehydroquinate dehydratase II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.773
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.764
AML58906.1
4-oxalmesaconate hydratase.
 
     0.758
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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