Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AML56086.1 | AML57015.1 | AXX16_0341 | AXX16_1295 | Putative inner membrane protein. | Uncharacterized protein YggN. | 0.774 |
AML56086.1 | AML58127.1 | AXX16_0341 | AXX16_2426 | Putative inner membrane protein. | Hypothetical protein. | 0.774 |
AML56086.1 | AML58872.1 | AXX16_0341 | AXX16_3176 | Putative inner membrane protein. | Putative membrane protein. | 0.773 |
AML56086.1 | matP_2 | AXX16_0341 | AXX16_3439 | Putative inner membrane protein. | Macrodomain Ter protein YcbG; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. | 0.771 |
AML56086.1 | mukB | AXX16_0341 | AXX16_3467 | Putative inner membrane protein. | Chromosome partition protein MukB; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily. | 0.519 |
AML56086.1 | mukE | AXX16_0341 | AXX16_3468 | Putative inner membrane protein. | Chromosome partition protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF. | 0.554 |
AML56086.1 | mukF | AXX16_0341 | AXX16_3469 | Putative inner membrane protein. | Chromosome partition protein MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity. | 0.586 |
AML56086.1 | ompA_4 | AXX16_0341 | AXX16_3438 | Putative inner membrane protein. | Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. | 0.733 |
AML56086.1 | trpR | AXX16_0341 | AXX16_4487 | Putative inner membrane protein. | Transcriptional repressor protein TrpR; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region. | 0.780 |
AML56086.1 | ycdY | AXX16_0341 | AXX16_2571 | Putative inner membrane protein. | Putative oxidoreductase component of anaerobic dehydrogenases. | 0.772 |
AML57015.1 | AML56086.1 | AXX16_1295 | AXX16_0341 | Uncharacterized protein YggN. | Putative inner membrane protein. | 0.774 |
AML57015.1 | AML58127.1 | AXX16_1295 | AXX16_2426 | Uncharacterized protein YggN. | Hypothetical protein. | 0.771 |
AML57015.1 | AML58872.1 | AXX16_1295 | AXX16_3176 | Uncharacterized protein YggN. | Putative membrane protein. | 0.774 |
AML57015.1 | matP_2 | AXX16_1295 | AXX16_3439 | Uncharacterized protein YggN. | Macrodomain Ter protein YcbG; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. | 0.758 |
AML57015.1 | ompA_4 | AXX16_1295 | AXX16_3438 | Uncharacterized protein YggN. | Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. | 0.645 |
AML57015.1 | trpR | AXX16_1295 | AXX16_4487 | Uncharacterized protein YggN. | Transcriptional repressor protein TrpR; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region. | 0.685 |
AML57015.1 | ycdY | AXX16_1295 | AXX16_2571 | Uncharacterized protein YggN. | Putative oxidoreductase component of anaerobic dehydrogenases. | 0.774 |
AML58127.1 | AML56086.1 | AXX16_2426 | AXX16_0341 | Hypothetical protein. | Putative inner membrane protein. | 0.774 |
AML58127.1 | AML57015.1 | AXX16_2426 | AXX16_1295 | Hypothetical protein. | Uncharacterized protein YggN. | 0.771 |
AML58127.1 | AML58872.1 | AXX16_2426 | AXX16_3176 | Hypothetical protein. | Putative membrane protein. | 0.773 |
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