Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AML56754.1 | pyrB | AXX16_1032 | AXX16_0087 | Metallo-dependent hydrolase, subgroup B. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.900 |
AML56754.1 | pyrC | AXX16_1032 | AXX16_3325 | Metallo-dependent hydrolase, subgroup B. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.900 |
AML56754.1 | pyrD_2 | AXX16_1032 | AXX16_3450 | Metallo-dependent hydrolase, subgroup B. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.900 |
AML60102.1 | carA | AXX16_4432 | AXX16_4456 | Dihydropyrimidinase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.931 |
AML60102.1 | carB_2 | AXX16_4432 | AXX16_4455 | Dihydropyrimidinase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.934 |
AML60102.1 | fre | AXX16_4432 | AXX16_0291 | Dihydropyrimidinase. | NAD(P)H-flavin reductase. | 0.851 |
AML60102.1 | pyrB | AXX16_4432 | AXX16_0087 | Dihydropyrimidinase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.985 |
AML60102.1 | pyrD_2 | AXX16_4432 | AXX16_3450 | Dihydropyrimidinase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.924 |
AML60102.1 | pyrE | AXX16_4432 | AXX16_0620 | Dihydropyrimidinase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.921 |
AML60102.1 | pyrF | AXX16_4432 | AXX16_2728 | Dihydropyrimidinase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.921 |
carA | AML60102.1 | AXX16_4456 | AXX16_4432 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Dihydropyrimidinase. | 0.931 |
carA | carB_2 | AXX16_4456 | AXX16_4455 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
carA | fre | AXX16_4456 | AXX16_0291 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | NAD(P)H-flavin reductase. | 0.903 |
carA | pheT_2 | AXX16_4456 | AXX16_3153 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.511 |
carA | pyrB | AXX16_4456 | AXX16_0087 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrC | AXX16_4456 | AXX16_3325 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.593 |
carA | pyrD_2 | AXX16_4456 | AXX16_3450 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.939 |
carA | pyrE | AXX16_4456 | AXX16_0620 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.905 |
carA | pyrF | AXX16_4456 | AXX16_2728 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.906 |
carB_2 | AML60102.1 | AXX16_4455 | AXX16_4432 | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | Dihydropyrimidinase. | 0.934 |
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