STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML59492.14-carboxymuconolactone decarboxylase. (102 aa)    
Predicted Functional Partners:
catC
Muconolactone isomerase; Belongs to the muconolactone Delta-isomerase family.
    
 0.920
catD_2
Beta-ketoadipate enol-lactone hydrolase.
  
 
 0.915
AML59493.1
Putative tautomerase.
 
   
 0.840
yofA_1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.628
garR_3
2-hydroxy-3-oxopropionate reductase.
 
  
 0.545
garR_2
2-hydroxy-3-oxopropionate reductase.
 
  
 0.539
AML58909.1
3-hydroxyisobutyrate dehydrogenase.
 
  
 0.524
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.523
catA
Catechol 1,2-dioxygenase.
 
  
 0.513
AML57741.1
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.507
Your Current Organism:
Serratia rubidaea
NCBI taxonomy Id: 61652
Other names: ATCC 27593, CCUG 10981, CCUG 9286, CIP 103234, DSM 4480, LMG 5019, LMG:5019, NBRC 103169, NCTC 12971, S. rubidaea, Serratia marinorubra, Serratia sp. V1E5a
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