Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRN97782.1 | KRO01724.1 | IV54_GL001082 | IV54_GL000379 | Superfamily I DNA RNA helicase. | Superfamily II DNA helicase. | 0.927 |
| KRN97782.1 | KRO03430.1 | IV54_GL001082 | IV54_GL000238 | Superfamily I DNA RNA helicase. | Hypothetical protein. | 0.666 |
| KRN97782.1 | KRO04173.1 | IV54_GL001082 | IV54_GL001695 | Superfamily I DNA RNA helicase. | DNA polymerase sliding clamp subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | 0.892 |
| KRN97782.1 | KRO05183.1 | IV54_GL001082 | IV54_GL000249 | Superfamily I DNA RNA helicase. | Dna topoisomerase. | 0.611 |
| KRN97782.1 | addA | IV54_GL001082 | IV54_GL000227 | Superfamily I DNA RNA helicase. | ATP-dependent exoDNAse (exonuclease V) beta subunit; ATP-dependent DNA helicase. | 0.683 |
| KRN97782.1 | topA | IV54_GL001082 | IV54_GL001962 | Superfamily I DNA RNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.816 |
| KRN98923.1 | KRN98924.1 | IV54_GL000736 | IV54_GL000737 | DNA-damage-inducible protein. | repA protein. | 0.609 |
| KRN98923.1 | KRO03430.1 | IV54_GL000736 | IV54_GL000238 | DNA-damage-inducible protein. | Hypothetical protein. | 0.632 |
| KRN98924.1 | KRN98923.1 | IV54_GL000737 | IV54_GL000736 | repA protein. | DNA-damage-inducible protein. | 0.609 |
| KRN98924.1 | KRO03430.1 | IV54_GL000737 | IV54_GL000238 | repA protein. | Hypothetical protein. | 0.768 |
| KRN98924.1 | KRO04458.1 | IV54_GL000737 | IV54_GL001351 | repA protein. | Hypothetical protein. | 0.703 |
| KRN98924.1 | KRO05183.1 | IV54_GL000737 | IV54_GL000249 | repA protein. | Dna topoisomerase. | 0.447 |
| KRO01724.1 | KRN97782.1 | IV54_GL000379 | IV54_GL001082 | Superfamily II DNA helicase. | Superfamily I DNA RNA helicase. | 0.927 |
| KRO01724.1 | KRO03430.1 | IV54_GL000379 | IV54_GL000238 | Superfamily II DNA helicase. | Hypothetical protein. | 0.626 |
| KRO01724.1 | KRO04173.1 | IV54_GL000379 | IV54_GL001695 | Superfamily II DNA helicase. | DNA polymerase sliding clamp subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | 0.702 |
| KRO01724.1 | KRO05183.1 | IV54_GL000379 | IV54_GL000249 | Superfamily II DNA helicase. | Dna topoisomerase. | 0.859 |
| KRO01724.1 | addA | IV54_GL000379 | IV54_GL000227 | Superfamily II DNA helicase. | ATP-dependent exoDNAse (exonuclease V) beta subunit; ATP-dependent DNA helicase. | 0.529 |
| KRO01724.1 | topA | IV54_GL000379 | IV54_GL001962 | Superfamily II DNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.934 |
| KRO03430.1 | KRN97782.1 | IV54_GL000238 | IV54_GL001082 | Hypothetical protein. | Superfamily I DNA RNA helicase. | 0.666 |
| KRO03430.1 | KRN98923.1 | IV54_GL000238 | IV54_GL000736 | Hypothetical protein. | DNA-damage-inducible protein. | 0.632 |
page 1 of 3