STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO04860.1TetR family transcriptional regulator. (217 aa)    
Predicted Functional Partners:
KRO04858.1
Export protein.
 
     0.728
KRO04861.1
HD superfamily hydrolase.
       0.650
KRO04859.1
ABC-type multidrug transport system, ATPase component.
 
     0.637
KRO04256.1
Adhesion exoprotein.
  
     0.491
KRO04798.1
Hypothetical protein.
  
     0.485
KRO03374.1
Cell surface protein precursor.
  
     0.462
KRO04745.1
Cell surface protein.
  
     0.434
KRO04161.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Lactobacillus paucivorans
NCBI taxonomy Id: 616990
Other names: DSM 22467, JCM 18045, L. paucivorans, LMG 25291, LMG:25291, Lactobacillus paucivorans Ehrmann et al. 2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.