Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRO04173.1 | KRO04374.1 | IV54_GL001695 | IV54_GL001434 | DNA polymerase sliding clamp subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | Phosphatase. | 0.418 |
KRO04374.1 | KRO04173.1 | IV54_GL001434 | IV54_GL001695 | Phosphatase. | DNA polymerase sliding clamp subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiatio [...] | 0.418 |
KRO04374.1 | KRO04375.1 | IV54_GL001434 | IV54_GL001435 | Phosphatase. | HAD superfamily hydrolase. | 0.809 |
KRO04374.1 | KRO04376.1 | IV54_GL001434 | IV54_GL001436 | Phosphatase. | Metal-binding protein. | 0.411 |
KRO04374.1 | KRO04598.1 | IV54_GL001434 | IV54_GL001001 | Phosphatase. | Oxidoreductase. | 0.952 |
KRO04374.1 | atpD | IV54_GL001434 | IV54_GL000025 | Phosphatase. | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.411 |
KRO04374.1 | atpG | IV54_GL001434 | IV54_GL000026 | Phosphatase. | F0F1-type ATP synthase, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.427 |
KRO04374.1 | atpH | IV54_GL001434 | IV54_GL000028 | Phosphatase. | F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.410 |
KRO04374.1 | cinA | IV54_GL001434 | IV54_GL001536 | Phosphatase. | Competence damage-inducible protein A; Belongs to the CinA family. | 0.814 |
KRO04374.1 | nadD | IV54_GL001434 | IV54_GL001441 | Phosphatase. | Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.518 |
KRO04374.1 | rsfS | IV54_GL001434 | IV54_GL001439 | Phosphatase. | Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.415 |
KRO04375.1 | KRO04374.1 | IV54_GL001435 | IV54_GL001434 | HAD superfamily hydrolase. | Phosphatase. | 0.809 |
KRO04376.1 | KRO04374.1 | IV54_GL001436 | IV54_GL001434 | Metal-binding protein. | Phosphatase. | 0.411 |
KRO04376.1 | nadD | IV54_GL001436 | IV54_GL001441 | Metal-binding protein. | Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.711 |
KRO04376.1 | rsfS | IV54_GL001436 | IV54_GL001439 | Metal-binding protein. | Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.751 |
KRO04598.1 | KRO04374.1 | IV54_GL001001 | IV54_GL001434 | Oxidoreductase. | Phosphatase. | 0.952 |
atpD | KRO04374.1 | IV54_GL000025 | IV54_GL001434 | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Phosphatase. | 0.411 |
atpD | atpG | IV54_GL000025 | IV54_GL000026 | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | F0F1-type ATP synthase, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
atpD | atpH | IV54_GL000025 | IV54_GL000028 | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
atpG | KRO04374.1 | IV54_GL000026 | IV54_GL001434 | F0F1-type ATP synthase, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | Phosphatase. | 0.427 |
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