Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRO03683.1ABC-type Na+ efflux pump, permease component. (406 aa)    
Predicted Functional Partners:
KRO03682.1
ABC-type uncharacterized transport system, ATPase component.
  
 0.985
KRO03684.1
Hypothetical protein.
       0.768
KRO03755.1
Immunity protein PlnI.
 
 
  0.619
KRO04778.1
ABC transporter ATPase.
 
  
 0.530
KRO04777.1
Hypothetical protein.
  
     0.439
KRO03681.1
Xanthine uracil permease.
       0.423
Your Current Organism:
Lactobacillus paucivorans
NCBI taxonomy Id: 616990
Other names: DSM 22467, JCM 18045, L. paucivorans, LMG 25291, LMG:25291, Lactobacillus paucivorans Ehrmann et al. 2010
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