STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aboUnannotated protein. (406 aa)    
Predicted Functional Partners:
gcvT
Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine.
 
 
 0.959
GCA_000733925_00400
Unannotated protein.
 
     0.814
GCA_000733925_00401
Unannotated protein.
 
     0.728
GCA_000733925_00402
Unannotated protein.
 
  
 0.654
phnW
Unannotated protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
 
 0.641
phnA
Unannotated protein.
 
     0.617
uhpC
Unannotated protein.
 
     0.611
GCA_000733925_03921
Unannotated protein.
  
 
 0.600
GCA_000733925_02013
Unannotated protein.
  
     0.519
GCA_000733925_02219
Unannotated protein.
  
     0.502
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.