GCA_000733925_00446 protein (Arenibacter algicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000733925_00446

Unannotated protein. (120 aa)

Predicted Functional Partners:

GCA_000733925_00447

0.941

GCA_000733925_00462

0.625

GCA_000733925_00445

0.621

silP

0.536

GCA_000733925_00448

0.518

GCA_000733925_01871

0.441

ruvC

0.420

GCA_000733925_00458

0.400

Your Current Organism:

Arenibacter algicola

NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_000733925_00445	GCA_000733925_00446	GCA_000733925_00445	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.621
GCA_000733925_00446	GCA_000733925_00445	GCA_000733925_00446	GCA_000733925_00445	Unannotated protein.	Unannotated protein.	0.621
GCA_000733925_00446	GCA_000733925_00447	GCA_000733925_00446	GCA_000733925_00447	Unannotated protein.	Unannotated protein.	0.941
GCA_000733925_00446	GCA_000733925_00448	GCA_000733925_00446	GCA_000733925_00448	Unannotated protein.	Unannotated protein.	0.518
GCA_000733925_00446	GCA_000733925_00458	GCA_000733925_00446	GCA_000733925_00458	Unannotated protein.	Unannotated protein.	0.400
GCA_000733925_00446	GCA_000733925_00462	GCA_000733925_00446	GCA_000733925_00462	Unannotated protein.	Unannotated protein.	0.625
GCA_000733925_00446	GCA_000733925_01871	GCA_000733925_00446	GCA_000733925_01871	Unannotated protein.	Unannotated protein.	0.441
GCA_000733925_00446	ruvC	GCA_000733925_00446	GCA_000733925_00449	Unannotated protein.	Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.420
GCA_000733925_00446	silP	GCA_000733925_00446	GCA_000733925_04364	Unannotated protein.	Unannotated protein.	0.536
GCA_000733925_00447	GCA_000733925_00446	GCA_000733925_00447	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.941
GCA_000733925_00447	GCA_000733925_00448	GCA_000733925_00447	GCA_000733925_00448	Unannotated protein.	Unannotated protein.	0.483
GCA_000733925_00447	ruvC	GCA_000733925_00447	GCA_000733925_00449	Unannotated protein.	Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.422
GCA_000733925_00448	GCA_000733925_00446	GCA_000733925_00448	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.518
GCA_000733925_00448	GCA_000733925_00447	GCA_000733925_00448	GCA_000733925_00447	Unannotated protein.	Unannotated protein.	0.483
GCA_000733925_00448	ruvC	GCA_000733925_00448	GCA_000733925_00449	Unannotated protein.	Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.702
GCA_000733925_00458	GCA_000733925_00446	GCA_000733925_00458	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.400
GCA_000733925_00462	GCA_000733925_00446	GCA_000733925_00462	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.625
GCA_000733925_01871	GCA_000733925_00446	GCA_000733925_01871	GCA_000733925_00446	Unannotated protein.	Unannotated protein.	0.441
GCA_000733925_01871	silP	GCA_000733925_01871	GCA_000733925_04364	Unannotated protein.	Unannotated protein.	0.792
ruvC	GCA_000733925_00446	GCA_000733925_00449	GCA_000733925_00446	Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	Unannotated protein.	0.420