STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_01151Unannotated protein. (363 aa)    
Predicted Functional Partners:
GCA_000733925_01152
Unannotated protein.
 
     0.960
GCA_000733925_01150
Unannotated protein.
 
    0.876
GCA_000733925_01153
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.873
GCA_000733925_03970
Unannotated protein.
  
     0.526
GCA_000733925_02787
Unannotated protein.
  
     0.494
GCA_000733925_04098
Unannotated protein.
  
     0.491
GCA_000733925_03502
Unannotated protein.
  
     0.476
GCA_000733925_04470
Unannotated protein.
  
     0.474
lon2
Unannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.452
GCA_000733925_00932
Unannotated protein.
  
    0.449
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.