Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000733925_01200 | GCA_000733925_03518 | GCA_000733925_01200 | GCA_000733925_03518 | Unannotated protein. | Unannotated protein. | 0.993 |
GCA_000733925_01200 | GCA_000733925_03602 | GCA_000733925_01200 | GCA_000733925_03602 | Unannotated protein. | Unannotated protein. | 0.824 |
GCA_000733925_01200 | ilvA | GCA_000733925_01200 | GCA_000733925_02366 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.660 |
GCA_000733925_01200 | ilvC | GCA_000733925_01200 | GCA_000733925_02365 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.689 |
GCA_000733925_01200 | leuD | GCA_000733925_01200 | GCA_000733925_02373 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.659 |
GCA_000733925_01200 | serC | GCA_000733925_01200 | GCA_000733925_02429 | Unannotated protein. | Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.616 |
GCA_000733925_01200 | tdcB | GCA_000733925_01200 | GCA_000733925_03505 | Unannotated protein. | Unannotated protein. | 0.660 |
GCA_000733925_01200 | thrB | GCA_000733925_01200 | GCA_000733925_01199 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.999 |
GCA_000733925_01200 | thrC | GCA_000733925_01200 | GCA_000733925_01198 | Unannotated protein. | Unannotated protein. | 0.994 |
GCA_000733925_03518 | GCA_000733925_01200 | GCA_000733925_03518 | GCA_000733925_01200 | Unannotated protein. | Unannotated protein. | 0.993 |
GCA_000733925_03518 | GCA_000733925_03602 | GCA_000733925_03518 | GCA_000733925_03602 | Unannotated protein. | Unannotated protein. | 0.826 |
GCA_000733925_03518 | ilvA | GCA_000733925_03518 | GCA_000733925_02366 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.826 |
GCA_000733925_03518 | ilvC | GCA_000733925_03518 | GCA_000733925_02365 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.680 |
GCA_000733925_03518 | leuD | GCA_000733925_03518 | GCA_000733925_02373 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.747 |
GCA_000733925_03518 | ltaA | GCA_000733925_03518 | GCA_000733925_02736 | Unannotated protein. | Unannotated protein. | 0.412 |
GCA_000733925_03518 | serC | GCA_000733925_03518 | GCA_000733925_02429 | Unannotated protein. | Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.632 |
GCA_000733925_03518 | tdcB | GCA_000733925_03518 | GCA_000733925_03505 | Unannotated protein. | Unannotated protein. | 0.826 |
GCA_000733925_03518 | thrB | GCA_000733925_03518 | GCA_000733925_01199 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.998 |
GCA_000733925_03518 | thrC | GCA_000733925_03518 | GCA_000733925_01198 | Unannotated protein. | Unannotated protein. | 0.983 |
GCA_000733925_03602 | GCA_000733925_01200 | GCA_000733925_03602 | GCA_000733925_01200 | Unannotated protein. | Unannotated protein. | 0.824 |
page 1 of 5