STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_01311Unannotated protein. (165 aa)    
Predicted Functional Partners:
GCA_000733925_02901
Unannotated protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.678
GCA_000733925_02838
Unannotated protein.
  
     0.677
truA
Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
   0.632
GCA_000733925_01313
Unannotated protein.
       0.615
GCA_000733925_02143
Unannotated protein.
  
     0.592
GCA_000733925_04080
Unannotated protein.
  
 
 
 0.560
GCA_000733925_01681
Unannotated protein.
  
     0.537
GCA_000733925_03280
Unannotated protein.
    
 
 0.496
GCA_000733925_01401
Unannotated protein.
  
   0.478
GCA_000733925_03937
Unannotated protein.
  
    0.416
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.