STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_02090Unannotated protein. (180 aa)    
Predicted Functional Partners:
fmt
Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.832
GCA_000733925_02089
Unannotated protein.
       0.832
hupB
Unannotated protein; Belongs to the bacterial histone-like protein family.
       0.785
GCA_000733925_02087
Unannotated protein.
       0.773
GCA_000733925_02091
Unannotated protein.
       0.651
GCA_000733925_02085
Unannotated protein; Belongs to the UPF0301 (AlgH) family.
 
     0.596
GCA_000733925_03147
Unannotated protein.
  
     0.582
GCA_000733925_00581
Unannotated protein.
  
     0.545
GCA_000733925_00525
Unannotated protein.
  
     0.513
GCA_000733925_00533
Unannotated protein.
  
     0.510
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.