STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_02173Unannotated protein. (349 aa)    
Predicted Functional Partners:
GCA_000733925_02398
Unannotated protein.
  
  
 0.693
GCA_000733925_03924
Unannotated protein.
   
 
 0.682
GCA_000733925_02955
Unannotated protein.
  
     0.637
GCA_000733925_02397
Unannotated protein.
 
    0.636
GCA_000733925_04576
Unannotated protein.
  
  
 0.623
GCA_000733925_02987
Unannotated protein.
  
     0.617
GCA_000733925_01819
Unannotated protein.
  
     0.614
GCA_000733925_04309
Unannotated protein.
  
    0.535
GCA_000733925_03140
Unannotated protein.
  
     0.533
csgA
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.525
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.