STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_02325Unannotated protein. (494 aa)    
Predicted Functional Partners:
GCA_000733925_01095
Unannotated protein.
 
 
 0.962
lptG
Unannotated protein.
  
 
  0.943
GCA_000733925_02326
Unannotated protein.
 
     0.859
ribBA
Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.850
spoIIIE
Unannotated protein.
       0.761
GCA_000733925_03017
Unannotated protein.
   
 
 0.670
GCA_000733925_00551
Unannotated protein.
  
     0.660
GCA_000733925_00779
Unannotated protein.
 
     0.647
GCA_000733925_00781
Unannotated protein.
  
     0.593
GCA_000733925_01532
Unannotated protein.
  
   
 0.571
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.