Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000733925_02451 | GCA_000733925_02452 | GCA_000733925_02451 | GCA_000733925_02452 | Unannotated protein. | Unannotated protein. | 0.715 |
GCA_000733925_02451 | GCA_000733925_02457 | GCA_000733925_02451 | GCA_000733925_02457 | Unannotated protein. | Unannotated protein. | 0.482 |
GCA_000733925_02451 | efp | GCA_000733925_02451 | GCA_000733925_02456 | Unannotated protein. | Unannotated protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.583 |
GCA_000733925_02451 | lpxA | GCA_000733925_02451 | GCA_000733925_02455 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.625 |
GCA_000733925_02451 | lpxC | GCA_000733925_02451 | GCA_000733925_02454 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.773 |
GCA_000733925_02451 | lpxD | GCA_000733925_02451 | GCA_000733925_02453 | Unannotated protein. | Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.566 |
GCA_000733925_02451 | sucD | GCA_000733925_02451 | GCA_000733925_02458 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.418 |
GCA_000733925_02451 | tsaE | GCA_000733925_02451 | GCA_000733925_02450 | Unannotated protein. | Unannotated protein. | 0.666 |
GCA_000733925_02452 | GCA_000733925_02451 | GCA_000733925_02452 | GCA_000733925_02451 | Unannotated protein. | Unannotated protein. | 0.715 |
GCA_000733925_02452 | GCA_000733925_02457 | GCA_000733925_02452 | GCA_000733925_02457 | Unannotated protein. | Unannotated protein. | 0.665 |
GCA_000733925_02452 | dck | GCA_000733925_02452 | GCA_000733925_03524 | Unannotated protein. | Unannotated protein. | 0.514 |
GCA_000733925_02452 | efp | GCA_000733925_02452 | GCA_000733925_02456 | Unannotated protein. | Unannotated protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.772 |
GCA_000733925_02452 | lpxA | GCA_000733925_02452 | GCA_000733925_02455 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.772 |
GCA_000733925_02452 | lpxC | GCA_000733925_02452 | GCA_000733925_02454 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.775 |
GCA_000733925_02452 | lpxD | GCA_000733925_02452 | GCA_000733925_02453 | Unannotated protein. | Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.731 |
GCA_000733925_02452 | pyrE | GCA_000733925_02452 | GCA_000733925_03214 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.549 |
GCA_000733925_02452 | sucD | GCA_000733925_02452 | GCA_000733925_02458 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.554 |
GCA_000733925_02452 | tsaE | GCA_000733925_02452 | GCA_000733925_02450 | Unannotated protein. | Unannotated protein. | 0.488 |
GCA_000733925_02457 | GCA_000733925_02451 | GCA_000733925_02457 | GCA_000733925_02451 | Unannotated protein. | Unannotated protein. | 0.482 |
GCA_000733925_02457 | GCA_000733925_02452 | GCA_000733925_02457 | GCA_000733925_02452 | Unannotated protein. | Unannotated protein. | 0.665 |
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