STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_02917Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)    
Predicted Functional Partners:
GCA_000733925_02916
Unannotated protein.
 
     0.898
GCA_000733925_02915
Unannotated protein.
 
     0.883
GCA_000733925_02914
Unannotated protein.
 
     0.812
GCA_000733925_01153
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.702
fecI
Unannotated protein.
  
     0.678
GCA_000733925_03428
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.665
GCA_000733925_03247
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.664
GCA_000733925_02236
Unannotated protein.
  
     0.658
sigD
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.645
GCA_000733925_03250
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.640
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.