STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_02986Unannotated protein. (292 aa)    
Predicted Functional Partners:
ccoN1
Unannotated protein; Belongs to the heme-copper respiratory oxidase family.
  
    0.887
GCA_000733925_02985
Unannotated protein.
       0.821
ppk
Unannotated protein; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.738
GCA_000733925_00854
Unannotated protein.
   
    0.651
GCA_000733925_02984
Unannotated protein.
       0.482
GCA_000733925_00416
Unannotated protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.454
GCA_000733925_00451
Unannotated protein; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.454
GCA_000733925_01167
Unannotated protein.
 
  
 0.435
GCA_000733925_00421
Unannotated protein.
   
    0.420
pta
Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.408
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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