mnmC protein (Arenibacter algicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mnmC

Unannotated protein. (221 aa)

Predicted Functional Partners:

GCA_000733925_02997

0.832

ilvK

0.659

GCA_000733925_02995

0.552

GCA_000733925_01681

0.472

gldH

0.437

grpE

0.430

GCA_000733925_00775

0.417

GCA_000733925_03205

0.401

Your Current Organism:

Arenibacter algicola

NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_000733925_00775	gldH	GCA_000733925_00775	GCA_000733925_04617	Unannotated protein.	Unannotated protein.	0.644
GCA_000733925_00775	mnmC	GCA_000733925_00775	GCA_000733925_02996	Unannotated protein.	Unannotated protein.	0.417
GCA_000733925_01681	gldH	GCA_000733925_01681	GCA_000733925_04617	Unannotated protein.	Unannotated protein.	0.478
GCA_000733925_01681	mnmC	GCA_000733925_01681	GCA_000733925_02996	Unannotated protein.	Unannotated protein.	0.472
GCA_000733925_02995	GCA_000733925_02997	GCA_000733925_02995	GCA_000733925_02997	Unannotated protein.	Unannotated protein.	0.551
GCA_000733925_02995	grpE	GCA_000733925_02995	GCA_000733925_02994	Unannotated protein.	Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depe [...]	0.509
GCA_000733925_02995	ilvK	GCA_000733925_02995	GCA_000733925_02998	Unannotated protein.	Unannotated protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.473
GCA_000733925_02995	mnmC	GCA_000733925_02995	GCA_000733925_02996	Unannotated protein.	Unannotated protein.	0.552
GCA_000733925_02997	GCA_000733925_02995	GCA_000733925_02997	GCA_000733925_02995	Unannotated protein.	Unannotated protein.	0.551
GCA_000733925_02997	ilvK	GCA_000733925_02997	GCA_000733925_02998	Unannotated protein.	Unannotated protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.600
GCA_000733925_02997	mnmC	GCA_000733925_02997	GCA_000733925_02996	Unannotated protein.	Unannotated protein.	0.832
GCA_000733925_03205	mnmC	GCA_000733925_03205	GCA_000733925_02996	Unannotated protein; Belongs to the UPF0246 family.	Unannotated protein.	0.401
gldH	GCA_000733925_00775	GCA_000733925_04617	GCA_000733925_00775	Unannotated protein.	Unannotated protein.	0.644
gldH	GCA_000733925_01681	GCA_000733925_04617	GCA_000733925_01681	Unannotated protein.	Unannotated protein.	0.478
gldH	mnmC	GCA_000733925_04617	GCA_000733925_02996	Unannotated protein.	Unannotated protein.	0.437
grpE	GCA_000733925_02995	GCA_000733925_02994	GCA_000733925_02995	Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depe [...]	Unannotated protein.	0.509
grpE	mnmC	GCA_000733925_02994	GCA_000733925_02996	Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depe [...]	Unannotated protein.	0.430
ilvK	GCA_000733925_02995	GCA_000733925_02998	GCA_000733925_02995	Unannotated protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Unannotated protein.	0.473
ilvK	GCA_000733925_02997	GCA_000733925_02998	GCA_000733925_02997	Unannotated protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Unannotated protein.	0.600
ilvK	mnmC	GCA_000733925_02998	GCA_000733925_02996	Unannotated protein; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Unannotated protein.	0.659