STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_03340Unannotated protein. (216 aa)    
Predicted Functional Partners:
GCA_000733925_03342
Unannotated protein.
       0.802
GCA_000733925_03341
Unannotated protein.
       0.798
GCA_000733925_04529
Unannotated protein.
 
     0.791
GCA_000733925_03091
Unannotated protein.
 
     0.790
GCA_000733925_00285
Unannotated protein.
 
    0.788
GCA_000733925_02460
Unannotated protein.
 
     0.783
GCA_000733925_02706
Unannotated protein.
 
     0.782
GCA_000733925_00252
Unannotated protein.
  
     0.758
GCA_000733925_03890
Unannotated protein.
   
 
 0.685
rsmE
Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.609
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.