Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000733925_03020 | GCA_000733925_03715 | GCA_000733925_03020 | GCA_000733925_03715 | Unannotated protein. | Unannotated protein. | 0.604 |
GCA_000733925_03020 | fdx | GCA_000733925_03020 | GCA_000733925_02431 | Unannotated protein. | Unannotated protein. | 0.935 |
GCA_000733925_03020 | frdB | GCA_000733925_03020 | GCA_000733925_04626 | Unannotated protein. | Unannotated protein. | 0.737 |
GCA_000733925_03020 | sucD | GCA_000733925_03020 | GCA_000733925_02458 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.451 |
GCA_000733925_03715 | GCA_000733925_03020 | GCA_000733925_03715 | GCA_000733925_03020 | Unannotated protein. | Unannotated protein. | 0.604 |
GCA_000733925_03715 | fdx | GCA_000733925_03715 | GCA_000733925_02431 | Unannotated protein. | Unannotated protein. | 0.675 |
GCA_000733925_03715 | frdB | GCA_000733925_03715 | GCA_000733925_04626 | Unannotated protein. | Unannotated protein. | 0.930 |
GCA_000733925_03715 | fumC | GCA_000733925_03715 | GCA_000733925_02168 | Unannotated protein. | Unannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.629 |
GCA_000733925_03715 | gcvP | GCA_000733925_03715 | GCA_000733925_03558 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.694 |
GCA_000733925_03715 | gltA2 | GCA_000733925_03715 | GCA_000733925_03439 | Unannotated protein. | Unannotated protein; Belongs to the citrate synthase family. | 0.709 |
GCA_000733925_03715 | petC1 | GCA_000733925_03715 | GCA_000733925_00737 | Unannotated protein. | Unannotated protein. | 0.604 |
GCA_000733925_03715 | sucA | GCA_000733925_03715 | GCA_000733925_00523 | Unannotated protein. | Unannotated protein. | 0.709 |
GCA_000733925_03715 | sucC | GCA_000733925_03715 | GCA_000733925_01657 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.669 |
GCA_000733925_03715 | sucD | GCA_000733925_03715 | GCA_000733925_02458 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.658 |
fdx | GCA_000733925_03020 | GCA_000733925_02431 | GCA_000733925_03020 | Unannotated protein. | Unannotated protein. | 0.935 |
fdx | GCA_000733925_03715 | GCA_000733925_02431 | GCA_000733925_03715 | Unannotated protein. | Unannotated protein. | 0.675 |
fdx | frdB | GCA_000733925_02431 | GCA_000733925_04626 | Unannotated protein. | Unannotated protein. | 0.889 |
fdx | petC1 | GCA_000733925_02431 | GCA_000733925_00737 | Unannotated protein. | Unannotated protein. | 0.935 |
fdx | sucD | GCA_000733925_02431 | GCA_000733925_02458 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.484 |
frdB | GCA_000733925_03020 | GCA_000733925_04626 | GCA_000733925_03020 | Unannotated protein. | Unannotated protein. | 0.737 |
page 1 of 4