STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mvaAUnannotated protein; Belongs to the HMG-CoA reductase family. (466 aa)    
Predicted Functional Partners:
GCA_000733925_03891
Unannotated protein.
 
 0.981
GCA_000733925_03840
Unannotated protein.
 
 
 0.965
GCA_000733925_03890
Unannotated protein.
 
  
 0.849
menA
Unannotated protein.
    
 
 0.767
kmo
Unannotated protein; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  
 0.704
dap4
Unannotated protein.
       0.566
GCA_000733925_03837
Unannotated protein.
       0.538
phbA
Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.528
GCA_000733925_00020
Unannotated protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.445
sdsA
Unannotated protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.445
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.